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Course O​utline

13 - 17 FEBRUARY 2023
RNA-Seq data analysis​

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Course will run from 09h00 - 16h00 everyday

Facilitator: 
Dr. Rian Pierneef (Coordinator) (Senior Researcher: BTP-Core; Bioinformatics)​

Module content:

​Day​ ​Content​​​Software​​Facilitator
​1​

​​Backgro​und; Introduction to RNA-Seq and Linux​.​

​

Linux​​

​

​Rian Pierneef

​2

​

Linux and big data​.​

​

Linux​

​

Rian Pierneef

​3

​

QC and exploratory analysis​.​

​

BBTools, Linux, Salmon​​​

​

Rian Pierneef

​​4​​Differential expression analysis.

​R, DESeq2​​Rian Pierneef
​5​~ Genes and Pathway analysis

~ ​Case study presentation (20-30 Minutes)

​​R​​Rian Pierneef
​

NOTE:   Cost also includes access to computer during training & Tea/coffee and a light lunch but excludes transport and accommodation.

Proof of payment or commitment to pay (i.e., Purchase Order) must be provided before date of training.

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For enquiries on the programme, registration and payment details, 
email Dr Adeola Rotimi at RotimiA@arc.agric.za


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