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Course O​utline

07 - 10 NOVEMBER 2022
Bacterial Whole Genome Sequencing (WGS) analysis

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Course will run from 09h00 - 16h00 everyday

Facilitator: 
Dr. Rian Pierneef (Coordinator) (Senior Researcher: BTP-Core; Bioinformatics)

Module content:

Day ​Content​SoftwareFacilitator
​1

​​Background; Introduction to Linux/GitHub, Conda and KBase.

Linux, KBase

Rian Pierneef

​2

Sequence QC, de novo assembly.

KBase​

Rian Pierneef

​3

Species identification and other traits of interest.

KBase​​

Rian Pierneef

​​4​~ Case study presentation
    (20-30 Minutes)

~ ​Individual analysis

​Trainees can bring their own data to analyse. Dummy data will also be provided.​Adeola Rotimi

NOTE:   Cost also includes access to computer during training & Tea/coffee and a light lunch but excludes transport and accommodation.

Proof of payment or commitment to pay (i.e., Purchase Order) must be provided before date of training.

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For enquiries on the programme, registration and payment details, 
email Dr Adeola Rotimi at RotimiA@arc.agric.za


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