​​​​Module-3.jpg

NOTE:  
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  • Cost also ​includes access to computer during training & Tea/coffee and a light lunch ​but excludes transport and accommodation.

  • Proof of payment or commitment to pay
    ​(i.e., Purchase Order) must be provided before date of training.


​​

Course O​utline


  11 - 14 JULY 2022
Genome-wi​de SNP data analysis: Signatures of Selection analysis​

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Course will run from 09h00 - 16h00 everyday

​
Facilitators:  
Dr Khanyisile Hadebe (Coordinator; Senior Researcher: Animal Genomics)
Dr Magriet van Der Nest (Senior Researcher: Bioinformatics)​

Module content:

​Day​ ​Content​​​Software​​Facilitator
​1​

Introduction to array-based Genome-wide SNP genotyping:

  • Quality control
  • ​Data file management​

  • Introduction to R​

​

PLINK
VCFTools
FCGene
BEAGLE
Fastphase
R/RStudio

​

Khanyisile Hadebe,

Magriet Van der Nest

​2

​

i​HS, Rbs and XP-EHH; and

Gene annotation, QTL, and pathway analysis.

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R/RStudio

Web-based tools​

​

Khanyisile Hadebe

Magriet Van der Nest

​3

​

Hands on data analysis​; and

Case study presentation (20-30 Minutes).

​

R/RStudio​

​

Khanyisile Hadebe

Magriet Van der Nest

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For enquiries on the programme, registration and payment details, 
email Dr Adeola Rotimi at RotimiA@arc.agric.za


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