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NOTE:  
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  • Cost also ​includes access to computer during training & Tea/coffee and a light lunch ​but excludes transport and accommodation.

  • Proof of payment or commitment to pay
    ​(i.e., Purchase Order) must be provided before date of training.


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Course O​utline


  11 - 14 JULY 2022
Genome-wi​de SNP data analysis: Signatures of Selection analysis

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Course will run from 09h00 - 16h00 everyday


Facilitators:  
Dr Khanyisile Hadebe (Coordinator; Senior Researcher: Animal Genomics)
Dr Magriet van Der Nest (Senior Researcher: Bioinformatics)​

Module content:

Day ​Content​SoftwareFacilitator
​1

Introduction to array-based Genome-wide SNP genotyping:

  • Quality control
  • ​Data file management​
  • Introduction to R

PLINK
VCFTools
FCGene
BEAGLE
Fastphase
R/RStudio

Khanyisile Hadebe,

Magriet Van der Nest

​2

i​HS, Rbs and XP-EHH; and

Gene annotation, QTL, and pathway analysis.

R/RStudio

Web-based tools

Khanyisile Hadebe

Magriet Van der Nest

​3

Hands on data analysis​; and

Case study presentation (20-30 Minutes).

R/RStudio

Khanyisile Hadebe

Magriet Van der Nest


For enquiries on the programme, registration and payment details, 
email Dr Adeola Rotimi at RotimiA@arc.agric.za


~~~ Back to Genomics Training Programmes ~~~

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